chore: bump deps to latest and update biome config

biome.json

@@ -1,7 +1,10 @@
 {
-  "$schema": "https://biomejs.dev/schemas/1.9.4/schema.json",
-  "organizeImports": {
-    "enabled": true
+  "$schema": "https://biomejs.dev/schemas/latest/schema.json",
+  "formatter": {
+    "enabled": true,
+    "indentStyle": "space",
+    "indentWidth": 2,
+    "lineWidth": 120
   },
   "linter": {
     "enabled": true,
@@ -15,12 +18,6 @@
       }
     }
   },
-  "formatter": {
-    "enabled": true,
-    "indentStyle": "space",
-    "indentWidth": 2,
-    "lineWidth": 120
-  },
   "javascript": {
     "formatter": {
       "quoteStyle": "single",
@@ -28,6 +25,7 @@
     }
   },
   "files": {
-    "ignore": ["dist/", "coverage/", "node_modules/", "scripts/update-query-ids.ts", "*.d.ts"]
+    "includes": ["src/**/*.{ts,tsx}", "tests/**/*.{ts,tsx}"],
+    "ignoreUnknown": true
   }
 }

package.json

@@ -20,18 +20,18 @@
     "graphql:update": "tsx scripts/update-query-ids.ts"
   },
   "dependencies": {
-    "commander": "^12.1.0",
-    "devalue": "^5.1.0",
+    "commander": "^14.0.2",
+    "devalue": "^5.5.0",
     "json5": "^2.2.3",
     "kleur": "^4.1.5"
   },
   "devDependencies": {
-    "@biomejs/biome": "^1.9.4",
-    "@types/node": "^22.10.0",
-    "@vitest/coverage-v8": "2.1.9",
-    "tsx": "^4.19.2",
-    "typescript": "^5.7.2",
-    "vitest": "^2.1.6"
+    "@biomejs/biome": "^2.3.8",
+    "@types/node": "^24.10.1",
+    "@vitest/coverage-v8": "4.0.15",
+    "tsx": "^4.21.0",
+    "typescript": "^5.9.3",
+    "vitest": "^4.0.15"
   },
   "engines": {
     "node": ">=20"